XIG: ValueSet/2.16.840.1.113762.1.4.1146.1143

FHIR IG Statistics: ValueSet/2.16.840.1.113762.1.4.1146.1143

Package	us.nlm.vsac
Resource Type	ValueSet
Id	2.16.840.1.113762.1.4.1146.1143
FHIR Version	R4
Source	http://fhir.org/packages/us.nlm.vsac/https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1146.1143/expansion
URL	http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1143
Version	20250218
Status	active
Date	2025-02-18T01:09:31-05:00
Name	COVID_19OrganismOrSubstanceInLabResults
Title	COVID_19 (Organism or Substance in Lab Results)
Realm	us
Authority	hl7
Description	This value set contains some provisional codes created for the COVID-19 response. It may be incomplete, as not all provisional COVID-19 codes are available in VSAC at the time of publication. Please contact the CSTE RCKMS Content Team for a complete list of codes to be included in this value set.
Purpose	(Clinical Focus: This set of values contains organisms and or substances relevant for reporting SARS_CoV_2.),(Data Element Scope: Organism and or substance names reported in laboratory results),(Inclusion Criteria: coronavirus 2 organism, antigen),(Exclusion Criteria: antibody)

Resources that use this resource

No resources found

Resources that this resource uses

CodeSystem
sct	SNOMED CT International Edition

Narrative

No narrative content found in resource

Source

{
  "resourceType": "ValueSet",
  "id": "2.16.840.1.113762.1.4.1146.1143",
  "meta": {
    "versionId": "34",
    "lastUpdated": "2025-02-18T01:09:30.000-05:00",
    "profile": [
      "http://hl7.org/fhir/StructureDefinition/shareablevalueset",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm",
      "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm"
    ]
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-author",
      "valueContactDetail": {
        "name": "CSTE Author"
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
      "valueString": "2019nCoV,Trigger"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
      "valueDate": "2025-02-18"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate",
      "valueDate": "2025-02-18"
    }
  ],
  "url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1143",
  "identifier": [
    {
      "system": "urn:ietf:rfc:3986",
      "value": "urn:oid:2.16.840.1.113762.1.4.1146.1143"
    }
  ],
  "version": "20250218",
  "name": "COVID_19OrganismOrSubstanceInLabResults",
  "title": "COVID_19 (Organism or Substance in Lab Results)",
  "status": "active",
  "date": "2025-02-18T01:09:31-05:00",
  "publisher": "CSTE Steward",
  "description": "This value set contains some provisional codes created for the COVID-19 response. It may be incomplete, as not all provisional COVID-19 codes are available in VSAC at the time of publication. Please contact the CSTE RCKMS Content Team for a complete list of codes to be included in this value set.",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "urn:iso:std:iso:3166",
          "code": "US"
        }
      ]
    }
  ],
  "purpose": "(Clinical Focus: This set of values contains organisms and or substances relevant for reporting SARS_CoV_2.),(Data Element Scope: Organism and or substance names reported in laboratory results),(Inclusion Criteria: coronavirus 2 organism, antigen),(Exclusion Criteria: antibody)",
  "compose": {
    "include": [
      {
        "system": "http://snomed.info/sct",
        "concept": [
          {
            "code": "1119343008",
            "display": "Messenger ribonucleic acid of severe acute respiratory syndrome coronavirus 2 (substance)"
          },
          {
            "code": "1155866009",
            "display": "Messenger ribonucleic acid of severe acute respiratory syndrome coronavirus 2 encoding spike protein (substance)"
          },
          {
            "code": "1157045004",
            "display": "Antigen of severe acute respiratory syndrome coronavirus 2 protein (substance)"
          },
          {
            "code": "1179416004",
            "display": "Deoxyribonucleic acid of severe acute respiratory syndrome coronavirus 2 (substance)"
          },
          {
            "code": "1187591006",
            "display": "Deoxyribonucleic acid plasmid encoding severe acute respiratory syndrome coronavirus 2 spike protein (substance)"
          },
          {
            "code": "1240411000000107",
            "display": "Ribonucleic acid of severe acute respiratory syndrome coronavirus 2 (substance)"
          },
          {
            "code": "1240581000000104",
            "display": "Severe acute respiratory syndrome coronavirus 2 detected (finding)"
          },
          {
            "code": "1287546003",
            "display": "Messenger ribonucleic acid of severe acute respiratory syndrome coronavirus 2 encoding BA.4/BA.5 lineage spike protein (substance)"
          },
          {
            "code": "1287627006",
            "display": "Messenger ribonucleic acid of severe acute respiratory syndrome coronavirus 2 encoding B lineage spike protein (substance)"
          },
          {
            "code": "1287628001",
            "display": "Messenger ribonucleic acid of severe acute respiratory syndrome coronavirus 2 encoding BA.1 lineage spike protein (substance)"
          },
          {
            "code": "29301000087104",
            "display": "Antigen of severe acute respiratory syndrome coronavirus 2 recombinant spike protein (substance)"
          },
          {
            "code": "840533007",
            "display": "Severe acute respiratory syndrome coronavirus 2 (organism)"
          },
          {
            "code": "840536004",
            "display": "Antigen of severe acute respiratory syndrome coronavirus 2 (substance)"
          },
          {
            "code": "871553007",
            "display": "Detection of severe acute respiratory syndrome coronavirus 2 antigen (observable entity)"
          },
          {
            "code": "871555000",
            "display": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 (observable entity)"
          },
          {
            "code": "871556004",
            "display": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in nasopharyngeal swab (observable entity)"
          },
          {
            "code": "871557008",
            "display": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in oropharyngeal swab (observable entity)"
          },
          {
            "code": "871558003",
            "display": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in sputum (observable entity)"
          },
          {
            "code": "871559006",
            "display": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in bronchoalveolar lavage fluid (observable entity)"
          },
          {
            "code": "871560001",
            "display": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 using polymerase chain reaction (observable entity)"
          },
          {
            "code": "871562009",
            "display": "Detection of severe acute respiratory syndrome coronavirus 2 (observable entity)"
          }
        ]
      }
    ]
  },
  "expansion": {
    "identifier": "urn:uuid:ac4019c4-adb4-4a6d-b92f-77f89b309340",
    "timestamp": "2025-05-23T18:23:54-04:00",
    "total": 21,
    "contains": [
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "1119343008",
        "display": "Messenger ribonucleic acid of severe acute respiratory syndrome coronavirus 2 (substance)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "1155866009",
        "display": "Messenger ribonucleic acid of severe acute respiratory syndrome coronavirus 2 encoding spike protein (substance)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "1157045004",
        "display": "Antigen of severe acute respiratory syndrome coronavirus 2 protein (substance)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "1179416004",
        "display": "Deoxyribonucleic acid of severe acute respiratory syndrome coronavirus 2 (substance)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "1187591006",
        "display": "Deoxyribonucleic acid plasmid encoding severe acute respiratory syndrome coronavirus 2 spike protein (substance)"
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      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
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        "display": "Ribonucleic acid of severe acute respiratory syndrome coronavirus 2 (substance)"
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        "system": "http://snomed.info/sct",
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        "display": "Severe acute respiratory syndrome coronavirus 2 detected (finding)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
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        "display": "Messenger ribonucleic acid of severe acute respiratory syndrome coronavirus 2 encoding BA.4/BA.5 lineage spike protein (substance)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "1287627006",
        "display": "Messenger ribonucleic acid of severe acute respiratory syndrome coronavirus 2 encoding B lineage spike protein (substance)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "1287628001",
        "display": "Messenger ribonucleic acid of severe acute respiratory syndrome coronavirus 2 encoding BA.1 lineage spike protein (substance)"
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        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "29301000087104",
        "display": "Antigen of severe acute respiratory syndrome coronavirus 2 recombinant spike protein (substance)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "840533007",
        "display": "Severe acute respiratory syndrome coronavirus 2 (organism)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "840536004",
        "display": "Antigen of severe acute respiratory syndrome coronavirus 2 (substance)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "871553007",
        "display": "Detection of severe acute respiratory syndrome coronavirus 2 antigen (observable entity)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "871555000",
        "display": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 (observable entity)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "871556004",
        "display": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in nasopharyngeal swab (observable entity)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "871557008",
        "display": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in oropharyngeal swab (observable entity)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "871558003",
        "display": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in sputum (observable entity)"
      },
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        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "871559006",
        "display": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in bronchoalveolar lavage fluid (observable entity)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "871560001",
        "display": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 using polymerase chain reaction (observable entity)"
      },
      {
        "system": "http://snomed.info/sct",
        "version": "http://snomed.info/sct/731000124108/version/20250301",
        "code": "871562009",
        "display": "Detection of severe acute respiratory syndrome coronavirus 2 (observable entity)"
      }
    ]
  }
}